ComQum-X set-up

Title:__________________________________________________    Date: _________________

PDB file:_______________  Reference: ____________________________  Symmetry:_______
 

Unit cell: a
b
c
alpha
beta
gamma
           

Resolution range:______  - ______     Sigma cutoff:______    # Unique relections:_________

R-factor:__________   R-free:_________   Test set size:________ % count:______________

Temperature:______ pH:_____________   Refinement program:_______________________

Fobs(max): _____________________ Fobs(min): ___________________________________
 
Parameter files
Topology files
   
   
   
   
   

Alternative conformations
Residue
Occupancy
Residue
Occupancy
Residue
Occupancy
           
           
           
           

Added hydrogen atoms
Atom
Residue
Atom
Residue
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Quantum system:

Residue
New residue number
Junction atoms
Other atoms
 
   
 
 
   
 
 
   
 
 
   
 
 
   
 
 
   
 
 
   
 
 
   
 
 
   
 
 
     
 
 
 
 

 
System
Amino acids
H2O/HOH
Atoms
PDB-file:______
     
1
 xxx
 xxx
 
2
     

Radius 1 = 1000 Å;    Radius 2 = 0 Å;    No exluded or included residues;    Basis set: 6

Atoms in system 1: __________  Atoms in system 2 = 3: __________  Charge(QC): ____

Basis set: ____________  DFT functional: ____________  # Basis functions:  _________

R-free:__________  R-factor:_________ (in mmrun2)   R-free (bindividual1):_________
 

Violations in
bonds (0.1)
angles (10)
dihedrals (60)
improper (20)
mmrun1
 
 
 
 
mmrun2
 
 
 
 
mmrun3
 
 
 -
 -

Specify violations:
 
 
 

Changes needed: